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mmzdouc / FERMO

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
https://fermo.bioinformatics.nl/example
MIT License
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Error downloading MS2Query files #25

Closed Dmente92 closed 2 weeks ago

Dmente92 commented 4 months ago

Hello, I am trying to run Fermo v0.8.11 with MS2Query On, but it gives me the following error when downloading the files:

Callback error updating ..store_processing.data...processed_data_FERMO.data.

Traceback (most recent call last): File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\flask\app.py", line 870, in full_dispatch_request rv = self.dispatch_request() File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\flask\app.py", line 855, in dispatch_request return self.ensure_sync(self.view_functions[rule.endpoint])(*view_args) # type: ignore[no-any-return] File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\dash\dash.py", line 1274, in dispatch ctx.run( File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\dash_callback.py", line 422, in add_context raise LongCallbackError( dash.exceptions.LongCallbackError: An error occurred inside a long callback: Multiple files could be the file containing the ms2ds_model file Traceback (most recent call last): File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\dash\long_callback\managers\diskcache_manager.py", line 175, in run user_callback_output = fn(maybe_progress, *user_callback_args) File "C:\Users\dmendez\Desktop\FERMO\src\fermo\app.py", line 364, in app_peaktable_processing FERMO_data = peaktable_processing(uploaded_files, dict_params,) File "C:\Users\dmendez\Desktop\FERMO\src\fermo\app_utils\FERMO_peaktable_processing.py", line 301, in peaktable_processing feature_dicts = ms2query_search( File "C:\Users\dmendez\Desktop\FERMO\src\fermo\processing\ms2query_search.py", line 149, in ms2query_search ms2library = create_library_object_from_one_dir( File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\ms2query\ms2library.py", line 507, in create_library_object_from_one_dir dict_with_file_names = select_files_for_ms2query(files_in_directory) File "C:\Users\dmendez\Miniconda3\envs\FERMO_v0.8.11\lib\site-packages\ms2query\ms2library.py", line 473, in select_files_for_ms2query assert dict_with_file_names[file_type] is None, \ AssertionError: Multiple files could be the file containing the ms2ds_model file.

I tried downloading the files by myself and copy it to the "libraries" folder, but I get the same error.

Any help would be appreciate. And thanks in advance.

mmzdouc commented 1 month ago

This issue is most likely caused due to changes in the MS2Query library files download, possibly related to https://github.com/mmzdouc/FERMO/issues/24.

This issue has been addressed in the upcoming version 1.0 of FERMO

mmzdouc commented 2 weeks ago

Not applicable in version >=1.0.0