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mne-tools / mne-bids-pipeline

Automatically process entire electrophysiological datasets using MNE-Python.
https://mne.tools/mne-bids-pipeline/
BSD 3-Clause "New" or "Revised" License
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Updating ds000248 (MNE "sample" dataset): Move fine-calibration and crosstalk files #182

Closed hoechenberger closed 3 years ago

hoechenberger commented 4 years ago

OpenNeuro dataset ds000248 ships with fine-calibration and cross-talk files. Since we've now standardized naming of those files, I would like to update the dataset by moving:

from to
/derivatives/ct_sparse_mgh.fif /sub-01/meg/sub-01_acq-crosstalk_meg.fif
/derivatives/sss_cal_mgh.dat /sub-01/meg/sub-01_acq-calibration_meg.dat

@jasmainak I see you're the one who published the dataset on OpenNeuro. Do you think you could update it? Or grant me access so I could do it myself?

Thanks!

jasmainak commented 4 years ago

I just gave you access. It's the email address ending with .net

hoechenberger commented 4 years ago

I just gave you access. It's the email address ending with .net

Thanks! I haven't received an email though… my account on OpenNeuro is linked to my GMail address richard.hoechenberger@gmail.com

btw I don't know if this happened just now or I never saw it before, but the latest revision of the dataset: https://openneuro.org/datasets/ds000248/versions/1.1.0 cannot be displayed correctly and claims to be from 1970… whoops.

hoechenberger commented 4 years ago

Friendly ping @jasmainak ☺️

jasmainak commented 4 years ago

oh dear, this was lost in my emails. I already sent an invite to your gmail address. Are you sure you didn't get it?

hoechenberger commented 4 years ago

@jasmainak Thanks! I didn't receive a notification but the dataset appears in my OpenNeuro dashboard now!

hoechenberger commented 4 years ago

(And I have writing permissions)

sappelhoff commented 3 years ago

It'd be awesome if the actual version on open neuro could be mirrored to the bids-examples repository.

It's looking like this currently: https://github.com/bids-standard/bids-examples/tree/master/ds000248

It'd not be a lot of work --> basically taking the exact openneuro dataset, and running something like: find <path_to_ds> -type f -name '*.fif' -exec truncate -s 0 {} + to zero out the big binary data files.

Then finally, making a PR to bids-examples with the updated set.

agramfort commented 3 years ago

I am working on it. I'll push an update of the dataset ASAP

hoechenberger commented 3 years ago

This has been fixed in the latest revision of the dataset.