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mne-tools / mne-connectivity

Connectivity algorithms that leverage the MNE-Python API.
https://mne.tools/mne-connectivity/dev/index.html
BSD 3-Clause "New" or "Revised" License
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Trying ci: Circle and GH #3

Closed adam2392 closed 3 years ago

adam2392 commented 3 years ago

I'm currently getting these doc failures:

generated/mne_connectivity.envelope_correlation.examples:15: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation.py
generated/mne_connectivity.envelope_correlation.examples:23: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation.py
generated/mne_connectivity.phase_slope_index.examples:15: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_psi_visual.py
generated/mne_connectivity.phase_slope_index.examples:23: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_psi_visual.py
generated/mne_connectivity.spectral_connectivity.examples:15: WARNING: undefined label: sphx_glr_auto_examples_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:23: WARNING: undefined label: sphx_glr_auto_examples_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:34: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_coherence_epochs.py
generated/mne_connectivity.spectral_connectivity.examples:42: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_coherence_epochs.py

@larsoner any idea what is causing this? Do I need to add something to the conf.py?

adam2392 commented 3 years ago

Sweet now everything passes!

For reference, here is the circleCI bug @larsoner:

generated/mne_connectivity.envelope_correlation.examples:15: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation.py
generated/mne_connectivity.envelope_correlation.examples:23: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation.py
generated/mne_connectivity.envelope_correlation.examples:34: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation_volume.py
generated/mne_connectivity.envelope_correlation.examples:42: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_envelope_correlation_volume.py
generated/mne_connectivity.phase_slope_index.examples:15: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_psi_visual.py
generated/mne_connectivity.phase_slope_index.examples:23: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_psi_visual.py
generated/mne_connectivity.spectral_connectivity.examples:15: WARNING: undefined label: sphx_glr_auto_examples_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:23: WARNING: undefined label: sphx_glr_auto_examples_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:34: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_coherence_epochs.py
generated/mne_connectivity.spectral_connectivity.examples:42: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_coherence_epochs.py
generated/mne_connectivity.spectral_connectivity.examples:53: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_connectivity_spectrum.py
generated/mne_connectivity.spectral_connectivity.examples:61: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_connectivity_spectrum.py
generated/mne_connectivity.spectral_connectivity.examples:72: WARNING: undefined label: sphx_glr_auto_examples_mixed_source_space_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:80: WARNING: undefined label: sphx_glr_auto_examples_mixed_source_space_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:91: WARNING: undefined label: sphx_glr_auto_examples_cwt_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:99: WARNING: undefined label: sphx_glr_auto_examples_cwt_sensor_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:110: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_label_connectivity.py
generated/mne_connectivity.spectral_connectivity.examples:118: WARNING: undefined label: sphx_glr_auto_examples_mne_inverse_label_connectivity.py
generating indices... genindex py-modindex done