Closed mjcourte closed 2 years ago
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I suspect a check_n_jobs function call missing.
Message ID: @.***>
Can you see if https://github.com/mne-tools/mne-python/pull/10567 fixes it?
Tested to your n_jobs branch mne 1.1.dev0. fits_dipole now working as intended with -1 jobs.
Thanks!
Describe the bug
When setting
n_jobs=-1
as an argument ofmne.fit_dipole()
, a blank AssertionError is thrown. Reading up the trace, one can see there is anassert n_jobs > 0
withinmne/surface.py
. Elsewhere in MNE-Py, settingn_jobs=-1
is valid and selects maximum available workers, and the docs forfit_dipole
state this. Settingn_jobs=16
runs successfully, where 16 is the maximum workers on my system, and the number of workers when using -1 in the steps prior to dipole fitting.Steps to reproduce
Run:
Expected results
The dipole fit to complete using maximum workers.
Actual results
Additional information
Output from `mne.sys_info()`
Platform: Windows-10-10.0.22000-SP0 Python: 3.9.9 | packaged by conda-forge | (main, Dec 20 2021, 02:36:06) [MSC v.1929 64 bit (AMD64)] Executable: C:\Users\Matt\anaconda3\envs\mne\python.exe CPU: Intel64 Family 6 Model 167 Stepping 1, GenuineIntel: 16 cores Memory: 63.8 GB mne: 0.24.1 numpy: 1.22.0 {blas=NO_ATLAS_INFO, lapack=lapack} scipy: 1.7.3 matplotlib: 3.5.1 {backend=module://matplotlib_inline.backend_inline} sklearn: 1.0.2 numba: 0.53.1 nibabel: 3.2.1 nilearn: 0.8.1 dipy: 1.4.1 cupy: Not found pandas: 1.3.5 mayavi: 4.7.2 pyvista: 0.33.2 {OpenGL 4.5.0 NVIDIA 496.49 via NVIDIA GeForce GTX 1070/PCIe/SSE2} pyvistaqt: 0.6.0 ipyvtklink: Not found vtk: 9.0.3 PyQt5: 5.12.3 ipympl: Not found mne_qt_browser: 0.1.7 pooch: v1.5.2 C:\Users\Matt\anaconda3\envs\mne\lib\site-packages\mne\utils\check.py:728: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(version) >= LooseVersion('5.10'): C:\Users\Matt\anaconda3\envs\mne\lib\site-packages\mne\utils\check.py:728: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(version) >= LooseVersion('5.10'):