Question: If mne.setup_volume_source_space is used, how do we visualize the source estimates on it?

mne-tools / mne-python

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

https://mne.tools

BSD 3-Clause "New" or "Revised" License

2.71k stars 1.32k forks source link

Question: If mne.setup_volume_source_space is used, how do we visualize the source estimates on it? #1285

Closed Anevar closed 10 years ago

Anevar commented 10 years ago

The source space generated does not have a built in plot function to view the source estimates.

agramfort commented 10 years ago

see https://github.com/mne-tools/mne-python/pull/672

we have not converged on the best way to do this.

larsoner commented 10 years ago

At this point I use freeview, but you could also use something like Slicer on another volumetric visualization tool. I plan on trying to incorporate some volumetric visualization in PySurfer (or maybe separately) in the next 6 to 12 months. There is a google summer of code student working on subcortical source spaces (likely discrete / volumetric), and that's likely to push some visualization use cases.

larsoner commented 10 years ago

...and by use freeview I mean I do stc.as_volume() and then use nibabel to save it to an nii file, which I then plot against the T1.mgz for each subject.