Use VEP docker - Githubissues

mobidic / SEAL

SEAL db - Simple, Efficient And Lite database for NGS

GNU General Public License v3.0

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Open Char-Al opened 1 year ago

Char-Al commented 1 year ago

It seems a good idea to use VEP docker image.

kyauy commented 1 year ago

could be very nice, currently have hard time to install VEP...

ardoli commented 1 year ago

singularity container is now installed and tested on the cluster.

ardoli commented 1 year ago

may be have 2 installations:

one singularity container for seal's server, for instant annotation. --> need to update the way to launch vep in seal
the singularity container one the cluster, for asynchronous, and may be bulk, annotations. --> 1 - use only VEP annotated VCFs --> 2 - use a directory to put unannotated VCFs, and wait for get VEP annotated VCFs complete files generated by a cron job on cluster.