mobie / mobie-utils-python

Python tools for MoBIE
MIT License
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Add shift to transforms for ome.zarr #48

Open constantinpape opened 2 years ago

constantinpape commented 2 years ago

We need to add a pixel shift to the scale-level transforms for ome.zarr to avoid small jumps in between the resolution layers. See for example https://s3.embl.de/i2k-2020/platy-raw.ome.zarr in bdv:

https://user-images.githubusercontent.com/4263537/159702767-e93fe2fb-15d4-4916-8ebc-9f73349513fd.mp4