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mobie / mobie-viewer-fiji

BSD 2-Clause "Simplified" License
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Can't enter a manual transform for segmentations #1126

Open jhennies opened 7 months ago

jhennies commented 7 months ago

@tischi found another one: entering a transformation for a segmentation results in this (immediately after pressing the "apply" button):

[ERROR] org.scijava.module.MethodCallException: Error executing method: org.embl.mobie.command.context.EnterTransformationCommand#applyTransform
    at org.scijava.module.MethodRef.execute(MethodRef.java:71)
    at org.scijava.module.AbstractModuleItem.callback(AbstractModuleItem.java:227)
    at org.scijava.widget.DefaultWidgetModel.callback(DefaultWidgetModel.java:179)
    at org.scijava.ui.swing.widget.SwingButtonWidget$1.actionPerformed(SwingButtonWidget.java:82)
    at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
    at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
    at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
    at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
    at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
    at java.awt.Component.processMouseEvent(Component.java:6539)
    at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
    at java.awt.Component.processEvent(Component.java:6304)
    at java.awt.Container.processEvent(Container.java:2239)
    at java.awt.Component.dispatchEventImpl(Component.java:4889)
    at java.awt.Container.dispatchEventImpl(Container.java:2297)
    at java.awt.Component.dispatchEvent(Component.java:4711)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
    at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
    at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
    at java.awt.Container.dispatchEventImpl(Container.java:2283)
    at java.awt.Window.dispatchEventImpl(Window.java:2746)
    at java.awt.Component.dispatchEvent(Component.java:4711)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
    at java.awt.EventQueue$4.run(EventQueue.java:733)
    at java.awt.EventQueue$4.run(EventQueue.java:731)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.scijava.module.MethodRef.execute(MethodRef.java:67)
    ... 39 more
Caused by: java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
    at java.util.ArrayList.rangeCheck(ArrayList.java:657)
    at java.util.ArrayList.remove(ArrayList.java:496)
    at org.embl.mobie.lib.transform.TransformHelper.fetchAddedTransformations(TransformHelper.java:496)
    at org.embl.mobie.lib.view.ViewManager.createTransformedSourceView(ViewManager.java:115)
    at org.embl.mobie.command.context.AbstractTransformationCommand.createAffineTransformedImage(AbstractTransformationCommand.java:131)
    at org.embl.mobie.command.context.AbstractTransformationCommand.applyAffineTransform3D(AbstractTransformationCommand.java:111)
    at org.embl.mobie.command.context.EnterTransformationCommand.applyTransform(EnterTransformationCommand.java:69)
    ... 44 more
tischi commented 7 months ago

Thanks @jhennies, I gave it a quick shot with some example project and got another error, so I am afraid this will need some more time....