BigWarp registration broken

[martinschorb]

Hi,

the BigWarp integration is broken.

• current MoBIE (release)
• open Platybrowser
• right click, registration - BigWarp

[ERROR] Command errored: Registration - BigWarp
java.lang.NullPointerException
    at java.util.ArrayList.addAll(ArrayList.java:583)
    at org.scijava.module.DefaultMutableModuleItem.setChoices(DefaultMutableModuleItem.java:227)
    at org.embl.mobie.command.context.AbstractRegistrationCommand.initialize(AbstractRegistrationCommand.java:44)
    at org.embl.mobie.command.context.BigWarpRegistrationCommand.initialize(BigWarpRegistrationCommand.java:70)
    at org.scijava.module.process.InitPreprocessor.process(InitPreprocessor.java:59)
    at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:103)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:154)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)

[tischi]

When are you teaching?

[martinschorb]

Friday

[martinschorb]

I will mostly focus on basic functionality and manual registration, but it would be nice to quickly demo BW as well.

[tischi]

Should work now, could you please test it?

[martinschorb]

no success for me: MoBIE-viewer is 5.1.6

[ERROR] Command errored: Registration - BigWarp
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
    at java.util.ArrayList.rangeCheck(ArrayList.java:659)
    at java.util.ArrayList.get(ArrayList.java:435)
    at org.embl.mobie.command.context.AbstractRegistrationCommand.initialize(AbstractRegistrationCommand.java:47)
    at org.embl.mobie.command.context.BigWarpRegistrationCommand.initialize(BigWarpRegistrationCommand.java:70)
    at org.scijava.module.process.InitPreprocessor.process(InitPreprocessor.java:59)
    at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:103)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:154)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)

[tischi]

I think I found it, but could it be that you had only one image open at the time that you tried that? So, there would not be much to register, is it 😉 ?

[tischi]

Please try again...

[martinschorb]

I think I found it, but could it be that you had only one image open at the time that you tried that? So, there would not be much to register, is it 😉 ?

yes, true... ;-)

[martinschorb]

it looks like F2, F3 and some other shortcuts don't seem to work. But it could also be that the BigWarp controls have changed with some updates and the help does not yet account for that.