search

mobie / mobie-viewer-fiji

BSD 2-Clause "Simplified" License
33 stars 13 forks source link

BigWarp registration broken #1172

Closed martinschorb closed 4 months ago

martinschorb commented 4 months ago

Hi,

the BigWarp integration is broken.

[ERROR] Command errored: Registration - BigWarp
java.lang.NullPointerException
    at java.util.ArrayList.addAll(ArrayList.java:583)
    at org.scijava.module.DefaultMutableModuleItem.setChoices(DefaultMutableModuleItem.java:227)
    at org.embl.mobie.command.context.AbstractRegistrationCommand.initialize(AbstractRegistrationCommand.java:44)
    at org.embl.mobie.command.context.BigWarpRegistrationCommand.initialize(BigWarpRegistrationCommand.java:70)
    at org.scijava.module.process.InitPreprocessor.process(InitPreprocessor.java:59)
    at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:103)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:154)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)
tischi commented 4 months ago

When are you teaching?

martinschorb commented 4 months ago

Friday

martinschorb commented 4 months ago

I will mostly focus on basic functionality and manual registration, but it would be nice to quickly demo BW as well.

tischi commented 4 months ago

Should work now, could you please test it?

martinschorb commented 4 months ago

no success for me: MoBIE-viewer is 5.1.6

[ERROR] Command errored: Registration - BigWarp
java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
    at java.util.ArrayList.rangeCheck(ArrayList.java:659)
    at java.util.ArrayList.get(ArrayList.java:435)
    at org.embl.mobie.command.context.AbstractRegistrationCommand.initialize(AbstractRegistrationCommand.java:47)
    at org.embl.mobie.command.context.BigWarpRegistrationCommand.initialize(BigWarpRegistrationCommand.java:70)
    at org.scijava.module.process.InitPreprocessor.process(InitPreprocessor.java:59)
    at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:103)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:154)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)
tischi commented 4 months ago

I think I found it, but could it be that you had only one image open at the time that you tried that? So, there would not be much to register, is it 😉 ?

tischi commented 4 months ago

Please try again...

martinschorb commented 4 months ago

I think I found it, but could it be that you had only one image open at the time that you tried that? So, there would not be much to register, is it 😉 ?

yes, true... ;-)

martinschorb commented 4 months ago

it looks like F2, F3 and some other shortcuts don't seem to work. But it could also be that the BigWarp controls have changed with some updates and the help does not yet account for that.