Opening openOrganelle dataset from github via MoBIE does not work

[constantinpape]

Opening https://github.com/mobie/open-organelle-test via mobie does not work. When trying to open the dataset I get the following error:

To reproduce:

• Start Fiji with MoBIE-beta
• Select "Plugins->MoBIE->open->Open MoBIE project...."
• Enter https://github.com/mobie/open-organelle-test as "Project Location"

cc @KateMoreva @tischi

[KateMoreva]

Opening https://github.com/mobie/open-organelle-test via mobie does not work. When trying to open the dataset I get the following error:

To reproduce:

• Start Fiji with MoBIE-beta
• Select "Plugins->MoBIE->open->Open MoBIE project...."
• Enter https://github.com/mobie/open-organelle-test as "Project Location"

cc @KateMoreva @tischi

@constantinpape, I think the problem is, that we do not have a dynamic file format chooser yet. You can open this dataset using:

public class OpenOpenOrganell
{
    public static void main( String[] args )
    {
        final ImageJ imageJ = new ImageJ();
        imageJ.ui().showUI();
        try {
            new MoBIE("https://github.com/mobie/open-organelle-test",
                    MoBIESettings.settings().imageDataFormat( ImageDataFormat.OpenOrganelleS3) );
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
}

[constantinpape]

Thanks for checking @KateMoreva; I will wait till @tischi has implemented dynamic file choosing and pushed it to the new release then and check again. (@tischi I would like to send this to John and the other Janelians then to demonstrate opening open-organelle in MoBIE)

[tischi]

I have updated MoBIE-beta.

[constantinpape]

Works now! I will add some more things to the example project and send around an update mail about it later.

[tischi]

Before sending it around to "all" Janelians maybe let's first optimize things in a smaller circle (us and John)?

[constantinpape]

Before sending it around to "all" Janelians maybe let's first optimize things in a smaller circle (us and John)?

Ok, I will show you the example later then we can see how to continue.