tischi
commented
1 year ago Caused by: java.lang.ClassCastException: net.imglib2.type.volatiles.VolatileUnsignedByteType$WrappedUnsignedByteType cannot be cast to net.imglib2.type.numeric.integer.GenericShortType
This smells like as if again, some intruder image managed to sneak in ;-)
Should your data be 16-bit or 8-bit?
The error message suggests that the images should 16-bit but somehow some 8-bit image managed to make its way into the folder...
Do you have any suspicion? Or maybe this is again one of those unfinished small images.
Maybe I could check for this somehow...
ThomasMicroscopy
I just had a crash. Images (from HCS import) where loaded fine, I seemed to be able to do things, zoom in, out, move, adjust contrast. Let it sit in the background a while, came back moving, zoom, suddenly crashed.
Exception in thread "PainterThread" java.lang.ClassCastException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:598) at java.util.concurrent.ForkJoinTask.reportException(ForkJoinTask.java:677) at java.util.concurrent.ForkJoinTask.join(ForkJoinTask.java:720) at java.util.concurrent.ForkJoinPool.invoke(ForkJoinPool.java:2616) at bdv.viewer.render.MultiResolutionRenderer.paintFullFrame(MultiResolutionRenderer.java:485) at bdv.viewer.render.MultiResolutionRenderer.paint(MultiResolutionRenderer.java:452) at bdv.viewer.ViewerPanel.paint(ViewerPanel.java:464) at bdv.viewer.render.PainterThread.run(PainterThread.java:82) Caused by: java.lang.ClassCastException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.util.concurrent.ForkJoinTask.getThrowableException(ForkJoinTask.java:598) at java.util.concurrent.ForkJoinTask.getException(ForkJoinTask.java:930) at java.util.concurrent.ForkJoinTask.invokeAll(ForkJoinTask.java:852) at bdv.viewer.render.TiledProjector.map(TiledProjector.java:110) at bdv.viewer.render.MultiResolutionRenderer.lambda$paintFullFrame$0(MultiResolutionRenderer.java:485) at java.util.concurrent.ForkJoinTask$AdaptedCallable.exec(ForkJoinTask.java:1424) at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:289) at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1056) at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1692) at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:175) Caused by: java.lang.ClassCastException: net.imglib2.type.volatiles.VolatileUnsignedByteType$WrappedUnsignedByteType cannot be cast to net.imglib2.type.numeric.integer.GenericShortType at net.imglib2.type.numeric.integer.GenericShortType.set(GenericShortType.java:54) at net.imglib2.type.volatiles.AbstractVolatileRealType.set(AbstractVolatileRealType.java:189) at net.imglib2.type.volatiles.AbstractVolatileRealType.set(AbstractVolatileRealType.java:51) at org.embl.mobie.lib.image.StitchedImage$VolatileValueFromTilesFetcherSupplier$VolatileValueFromTilesFetcher.accept(StitchedImage.java:592) at org.embl.mobie.lib.image.StitchedImage$VolatileValueFromTilesFetcherSupplier$VolatileValueFromTilesFetcher.accept(StitchedImage.java:541) at net.imglib2.position.FunctionRandomAccessible$FunctionRandomAccess.get(FunctionRandomAccessible.java:84) at net.imglib2.outofbounds.OutOfBoundsConstantValue.get(OutOfBoundsConstantValue.java:74) at net.imglib2.view.TranslationRandomAccess.get(TranslationRandomAccess.java:223) at net.imglib2.RandomAccess.setPositionAndGet(RandomAccess.java:129) at net.imglib2.RandomAccessible.getAt(RandomAccessible.java:163) at org.embl.mobie.lib.image.StitchedImage$VolatileValueFromTilesFetcherSupplier$VolatileValueFromTilesFetcher.accept(StitchedImage.java:591) at org.embl.mobie.lib.image.StitchedImage$VolatileValueFromTilesFetcherSupplier$VolatileValueFromTilesFetcher.accept(StitchedImage.java:541) at net.imglib2.position.FunctionRandomAccessible$FunctionRandomAccess.get(FunctionRandomAccessible.java:84) at net.imglib2.outofbounds.OutOfBoundsConstantValue.get(OutOfBoundsConstantValue.java:74) at net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType.get(ClampingNLinearInterpolatorVolatileRealType.java:90) at net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType.get(ClampingNLinearInterpolatorVolatileRealType.java:49) at net.imglib2.realtransform.AffineRandomAccessible$AffineRandomAccess.get(AffineRandomAccessible.java:180) at bdv.viewer.render.VolatileHierarchyProjector.map(VolatileHierarchyProjector.java:291) at bdv.viewer.render.VolatileHierarchyProjector.map(VolatileHierarchyProjector.java:226) at bdv.viewer.render.AccumulateProjector.lambda$null$1(AccumulateProjector.java:132) at java.util.concurrent.ForkJoinTask$AdaptedCallable.exec(ForkJoinTask.java:1424) at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:289) at java.util.concurrent.ForkJoinTask.doJoin(ForkJoinTask.java:389) at java.util.concurrent.ForkJoinTask.invokeAll(ForkJoinTask.java:851) at bdv.viewer.render.AccumulateProjector.map(AccumulateProjector.java:130) at bdv.viewer.render.TiledProjector.lambda$null$0(TiledProjector.java:112) ... 5 more
Here the screenshot when it happened. The image window contents was then frozen.