Open tischi opened 1 month ago
Hi,
this is a true pain, because the translations somehow are stored independently. I wrote a TCL script to extract them during a running Amira session, because you cannot really export them. AFAIR the pixel scaling can only be deferred from the data box size and the displayed bounding box size. That was a while ago, so I don´t really remember too much of it. https://github.com/martinschorb/mobie_import/blob/master/tform_export.rc
Then here is a Python to convert them into BDV-style: https://github.com/martinschorb/mobie_import/blob/master/amira2bdv.py
If I can interpret that correctly, the script you found only converts the parameters from a manual transform in Amira. If you use some auto-alignments it would not be able to catch them.
Hi @martinschorb ,
Are you aware of documentation that would explain how to convert transformations (including rotations) as they appear in Amira to affine transformations that can be used in MoBIE?
In fact, I found this code.
Do you think that would cover most use-cases?