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mobie / platybrowser-project

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Error with Open MoBIE Project.. #64

Closed K-Meech closed 4 years ago

K-Meech commented 4 years ago

Opening the mobie project (from usual remote location) leads to error copied below: Running on Windows 10 - I wonder if this has any relation to: https://github.com/mobie/mobie-viewer-fiji/issues/62

java.io.FileNotFoundException: https://raw.githubusercontent.com/mobie-org/platybrowser-datasets/tree/master/data/master/data/datasets.json at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1890) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492) at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:263) at java.net.URL.openStream(URL.java:1045) at de.embl.cba.tables.FileAndUrlUtils.getInputStream(FileAndUrlUtils.java:102) at de.embl.cba.mobie.dataset.DatasetsParser.datasetsFromFile(DatasetsParser.java:36) at de.embl.cba.mobie.dataset.DatasetsParser.datasetsFromDataSource(DatasetsParser.java:18) at de.embl.cba.mobie.viewer.MoBIEViewer.(MoBIEViewer.java:75) at de.embl.cba.mobie.viewer.MoBIEViewer.(MoBIEViewer.java:59) at de.embl.cba.mobie.command.OpenMoBIEProjectCommand.run(OpenMoBIEProjectCommand.java:19) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) [ERROR] Module threw exception java.lang.UnsupportedOperationException: Could not open or parse datasets file: https://raw.githubusercontent.com/mobie-org/platybrowser-datasets/tree/master/data/master/data/datasets.json at de.embl.cba.mobie.dataset.DatasetsParser.datasetsFromDataSource(DatasetsParser.java:29) at de.embl.cba.mobie.viewer.MoBIEViewer.(MoBIEViewer.java:75) at de.embl.cba.mobie.viewer.MoBIEViewer.(MoBIEViewer.java:59) at de.embl.cba.mobie.command.OpenMoBIEProjectCommand.run(OpenMoBIEProjectCommand.java:19) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)

constantinpape commented 4 years ago

I tried with the latest version from the MoBIE update site and it works on Linux.

Looking at the error message, the problem is that the file https://raw.githubusercontent.com/mobie-org/platybrowser-datasets/tree/master/data/master/data/datasets.json does not exist, it should be: https://raw.githubusercontent.com/mobie/platybrowser-datasets/master/data/datasets.json

@K-Meech Maybe you are using the wrong url? Could you try with the following in 'Open MoBIE project ...': https://github.com/mobie/platybrowser-datasets

K-Meech commented 4 years ago

That works! Weird that I had the other url for some reason... I just checked with a new fiji installation / mobie download, and the default url that appears is the correct one: https://github.com/mobie/platybrowser-datasets.