mobie / platybrowser-project

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cannot load mobie #73

Closed HernandoMV closed 4 years ago

HernandoMV commented 4 years ago

after updating, MoBie GUI does not open, though the EM data loads

Adding source: sbem-6dpf-1-whole-raw... [ERROR] Module threw error java.lang.NoSuchMethodError: de.embl.cba.bdv.utils.BdvUtils.getShortCutString(Ljava/lang/String;)Ljava/lang/String; at de.embl.cba.mobie.ui.viewer.ActionPanel.installBdvBehavioursAndPopupMenu(ActionPanel.java:105) at de.embl.cba.mobie.ui.viewer.ActionPanel.setBdvAndInstallBehavioursAndPopupMenu(ActionPanel.java:79) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:100) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:50) at de.embl.cba.mobie.ui.command.OpenPlatyBrowserCommand.run(OpenPlatyBrowserCommand.java:16) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)

K-Meech commented 4 years ago

This works for me on the latest MoBIE - how are you opening MoBIE? Are you using 'Open MoBIE Project...' and https://github.com/mobie/platybrowser-datasets as the location?

K-Meech commented 4 years ago

Also, you're using the MoBIE update site and have the old 'EMBL-CBA' disabled?

HernandoMV commented 4 years ago

I was doing Open Platybrowser. I am doing what you suggested and I get the same problem. I had a different location though

HernandoMV commented 4 years ago

whops, I broke Fiji when I disabled EMBL-CBA... :( will reinstall Thanks!

HernandoMV commented 4 years ago

No problem now :)