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mobie / platybrowser-project

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Platybrowser doesn't load #74

Closed vzinche closed 3 years ago

vzinche commented 3 years ago

When I start the default platybrowser I get these errors. Does anyone else also have it, or is it just me? It is for the mobie-beta update site, and I have all the recent image-j updates

Console: [ERROR] Module threw exception java.lang.NullPointerException at de.embl.cba.mobie.n5.N5ImageLoader.createSetupImgLoader(N5ImageLoader.java:164) at de.embl.cba.mobie.n5.N5ImageLoader.open(N5ImageLoader.java:112) at de.embl.cba.mobie.n5.N5ImageLoader.getSetupImgLoader(N5ImageLoader.java:156) at de.embl.cba.mobie.n5.N5ImageLoader.getSetupImgLoader(N5ImageLoader.java:73) at bdv.BigDataViewer.initSetupNumericType(BigDataViewer.java:261) at bdv.BigDataViewer.initSetups(BigDataViewer.java:293) at de.embl.cba.bdv.utils.sources.LazySpimSource.initSpimData(LazySpimSource.java:92) at de.embl.cba.bdv.utils.sources.LazySpimSource.wrappedVolatileSource(LazySpimSource.java:66) at de.embl.cba.bdv.utils.sources.LazySpimSource.getType(LazySpimSource.java:137) at de.embl.cba.bdv.utils.sources.LazySpimSource.getType(LazySpimSource.java:48) at bdv.util.BdvFunctions.addSource(BdvFunctions.java:581) at bdv.util.BdvFunctions.show(BdvFunctions.java:196) at de.embl.cba.mobie.ui.viewer.SourcesPanel.showIntensitySource(SourcesPanel.java:387) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToViewer(SourcesPanel.java:364) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToPanelAndViewer(SourcesPanel.java:339) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToPanelAndViewer(SourcesPanel.java:296) at de.embl.cba.mobie.bookmark.BookmarksManager.addSourcesToPanelAndViewer(BookmarksManager.java:53) at de.embl.cba.mobie.bookmark.BookmarksManager.setView(BookmarksManager.java:35) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:87) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:52) at de.embl.cba.mobie.ui.command.OpenPlatyBrowserCommand.run(OpenPlatyBrowserCommand.java:16) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)

Exception: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:307) at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:166) at ij.IJ.runPlugIn(IJ.java) at ij.Executer.runCommand(Executer.java:150) at ij.Executer.run(Executer.java:68) at java.lang.Thread.run(Thread.java:748) Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:192) at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:303) ... 5 more Caused by: java.lang.NullPointerException at de.embl.cba.mobie.n5.N5ImageLoader.createSetupImgLoader(N5ImageLoader.java:164) at de.embl.cba.mobie.n5.N5ImageLoader.open(N5ImageLoader.java:112) at de.embl.cba.mobie.n5.N5ImageLoader.getSetupImgLoader(N5ImageLoader.java:156) at de.embl.cba.mobie.n5.N5ImageLoader.getSetupImgLoader(N5ImageLoader.java:73) at bdv.BigDataViewer.initSetupNumericType(BigDataViewer.java:261) at bdv.BigDataViewer.initSetups(BigDataViewer.java:293) at de.embl.cba.bdv.utils.sources.LazySpimSource.initSpimData(LazySpimSource.java:92) at de.embl.cba.bdv.utils.sources.LazySpimSource.wrappedVolatileSource(LazySpimSource.java:66) at de.embl.cba.bdv.utils.sources.LazySpimSource.getType(LazySpimSource.java:137) at de.embl.cba.bdv.utils.sources.LazySpimSource.getType(LazySpimSource.java:48) at bdv.util.BdvFunctions.addSource(BdvFunctions.java:581) at bdv.util.BdvFunctions.show(BdvFunctions.java:196) at de.embl.cba.mobie.ui.viewer.SourcesPanel.showIntensitySource(SourcesPanel.java:387) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToViewer(SourcesPanel.java:364) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToPanelAndViewer(SourcesPanel.java:339) at de.embl.cba.mobie.ui.viewer.SourcesPanel.addSourceToPanelAndViewer(SourcesPanel.java:296) at de.embl.cba.mobie.bookmark.BookmarksManager.addSourcesToPanelAndViewer(BookmarksManager.java:53) at de.embl.cba.mobie.bookmark.BookmarksManager.setView(BookmarksManager.java:35) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:87) at de.embl.cba.mobie.ui.viewer.MoBIEViewer.(MoBIEViewer.java:52) at de.embl.cba.mobie.ui.command.OpenPlatyBrowserCommand.run(OpenPlatyBrowserCommand.java:16) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) ... 1 more

cc @tischi @constantinpape @K-Meech

constantinpape commented 3 years ago

Yes, this is an issue with the EMBL s3, Josep is trying to fix it. See https://github.com/mobie/mobie/issues/18.

vzinche commented 3 years ago

Sorry, I've missed this one