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mobie / spatial-transcriptomics-example-project

An example project for spatial transcriptomics data
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image_and_spots #16

Closed tischi closed 2 years ago

tischi commented 2 years ago

Should the spots coincide with spot signal in the image? Because, for me, they don't.

image
constantinpape commented 2 years ago

No, the image is a membrane marker, the spots are sequencing readouts that were spatially mapped to the same space, they are not expected to be very well correlated.