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mobie / spatial-transcriptomics-example-project

An example project for spatial transcriptomics data
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Zoom behaviour is different for first channel vs. other channels #21

Open constantinpape opened 2 years ago

constantinpape commented 2 years ago

The zoom behaviour for sources that come from ome.zarr with multiple channels is different for the first source (behaves correctly), vs. the other channels (behaves incorrectly).

See this video, where everything works correct for membrane-marker1 (the source corresponding to channel 0), but not for nuclei (corresponding to channel 3):

https://user-images.githubusercontent.com/4263537/196243863-65660a79-f2e4-41ce-9da3-754c360b66c4.mp4

@tischi it's probably best to first check if there is an underlying issue in mobie.io via unit-tests. I think I know how to do this (extend the test to the higher scale levels), will try to follow up tomorrow.

tischi commented 1 year ago

Is that still an issue?

constantinpape commented 1 year ago

Yep, it is. I think I know what's going on, or at least I know how to test for it. I will try to follow up on this.