Genomic Reference for Files in FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/ Directories - Githubissues

mobinasri / flagger

Evaluating genome assemblies

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Genomic Reference for Files in FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/ Directories #33

Open NahyunKong opened 6 months ago

NahyunKong commented 6 months ago

Hi,

For the files in FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/ directories, are their cooddinate based on T2T-CHM13 (v.2.0) or T2T-CHM13 (v.1.1)or hg38?
For examples, files in here: https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=submissions/e9ad8022-1b30-11ec-ab04-0a13c5208311--COVERAGE_ANALYSIS_Y1_GENBANK/FLAGGER/APR_08_2022/FINAL_HIFI_BASED/FLAGGER_HIFI_PROJECTED_SIMPLIFIED_BEDS/

Thank you!

mobinasri commented 6 months ago

Hi, They are in the coordinates of chm13v1.1.