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modenaxe / auto-lowerlimb-models-paper

Data (bone geometries and gait analysis data) and scripts to reproduce the results and figures of the scientific publication specified in the README file.
https://simtk.org/projects/auto-sk-models
Apache License 2.0
6 stars 3 forks source link

missing function createLowerLimbJoints #4

Closed vuvietbach closed 1 year ago

vuvietbach commented 1 year ago

Correct me if I'm wrong but when I run createAutomaticOsimModels script, Matlab display error Unrecognized function or variable 'createLowerLimbJoints'. Where can I find this function?

modenaxe commented 1 year ago

hello, the function is in the repository, here. Have you downloaded the git submodule as detailed in the README (Requirements section)? I hope this helps, Luca

vuvietbach commented 1 year ago

Thank you, I did not find it because I did downloaded msk staple but it was the main branch and in the main branch 'createLowerLimbJoints' function may be 'createOpensimModelJoints' ?. Anyway, it is my mistake, I will follow instructions closely next time. Thank you.

vuvietbach commented 1 year ago

Thanks for your answer. I am interested in including muscle in the resulting model. Would it be possible for you to send me the instructions about how to do it? I would appreciate it because as a third-year student majoring in Computer Science, I don't have much experience creating subject-specific models. I am looking forward to hearing from you. Best regards Bach

On Wed, Apr 19, 2023 at 6:50 PM Luca Modenese @.***> wrote:

hello, the function is in the repository, here https://github.com/modenaxe/msk-STAPLE/blob/3f2f2761f7442d2e7832b8083fb1915d071049b6/STAPLE/opensim/createLowerLimbJoints.m . Have you downloaded the git submodule as detailed in the README (Requirements section)? I hope this helps, Luca

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modenaxe commented 1 year ago

Adding muscles is not trivial at this stage of development, although I am working on it. I suggest you reading this paper and the step-by-step guide that is available in the supplementary material. It will at least give you an idea of what needs to be done in terms of sequence of operations. I hope this help, Luca

vuvietbach commented 1 year ago

Thank you for your timely response. I did follow your workflow mentioned in your 2018 paper, and it helped me a lot. However, I find the process too manual. I guess for the time being, there is no other option. Best regards, Bach

On Fri, Apr 21, 2023 at 8:39 AM Luca Modenese @.***> wrote:

Adding muscles is not trivial at this stage of development, although I am working on it. I suggest you reading this paper https://www.sciencedirect.com/science/article/pii/S0021929018302288?via%3Dihub and the step-by-step guide that is available in the supplementary material https://figshare.shef.ac.uk/articles/dataset/Data_for_paper_Investigation_of_the_dependence_of_joint_contact_forces_on_musculotendon_parameters_using_a_codified_workflow_for_image-based_modelling_/5863422. It will at least give you an idea of what needs to be done in terms of sequence of operations. I hope this help, Luca

— Reply to this email directly, view it on GitHub https://github.com/modenaxe/auto-lowerlimb-models-paper/issues/4#issuecomment-1517137497, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQUPMISB5SZM7CEEWPA2DLLXCHQO3ANCNFSM6AAAAAAXAS2I6I . You are receiving this because you modified the open/close state.Message ID: @.***>