Where can I download "solver_unet.prototxt" and "phseg_v5.caffemodel"

mohamed-ezz / saratan

Code for MICCAI 2016 paper : Automatic liver and lesions segmentation using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields

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Where can I download "solver_unet.prototxt" and "phseg_v5.caffemodel" #1

Closed tianzq closed 7 years ago

tianzq commented 7 years ago

Where can I download these two files, which are used in "notebooks/realtime_train.ipynb"? Thanks.

mohamed-ezz commented 7 years ago

I initially got them from the UNET author here : http://lmb.informatik.uni-freiburg.de/people/ronneber/u-net/u-net-release-2015-10-02.tar.gz

Then I did some changes to the solver and network definition prototxt. I just pushed my changes here 7d7b9d9. Remember to modify the last convolutional layer according to the number of outputs you need (here I have 3 or 2 classes).

mubo123 commented 7 years ago

I couldnt understand the strucre of your code. Fron which file we will start the program and step by step to get the results. The dataset you mentioned I downloaded this dataset but the formate of this dataset is totallly different from the 3DIRDb dataset. Please give a whole guidelines because its easy for me to get started .

mohamed-ezz commented 7 years ago

Hi @mubo123 , What are you trying to achieve? Which dataset have you downloaded ? We mainly use 3D-IRCADb-01 dataset and FIRE3 dataset (which is not yet public).

Let me know in detail how I can help. I'll close this issue for now since it was meant for the prototxt files, you can create another issue for your questions.