From using various values for r2cutoff = and min_time_spacing = I have realised that whenever select_evenly_distributed_switching_genes was improving accuracy it was only due to the fact that it was removing genes with a low r2. Conclusion: choosing an appropriate r2cutoff = is more effective, in terms of average accuracy throught the sample, than using select_evenly_distributed_switching_genes.
From using various values for
r2cutoff =andmin_time_spacing =I have realised that wheneverselect_evenly_distributed_switching_geneswas improving accuracy it was only due to the fact that it was removing genes with a low r2. Conclusion: choosing an appropriater2cutoff =is more effective, in terms of average accuracy throught the sample, than usingselect_evenly_distributed_switching_genes.