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moiexpositoalonsolab
/
grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
http://grene-net.org
GNU General Public License v3.0
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Too many jobs created if reference genome has a large number of contigs
#8
J-Wall
closed
3 years ago
2
Add option to use bwa-mem2 for mapping
#7
J-Wall
closed
3 years ago
3
vcf file with all positions
#6
florianhahn87
closed
2 years ago
6
No module named 'numpy.core._multiarray_umath'
#5
bensprung
closed
3 years ago
14
separate output files if running on multiple files
#4
florianhahn87
closed
3 years ago
10
Issues during variant calling
#3
florianhahn87
closed
3 years ago
2
GATK Realigner
#2
florianhahn87
closed
3 years ago
2
Grenepipe gets stuck in qualimap step
#1
florianhahn87
closed
3 years ago
5
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