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mojaveazure / angsd-wrapper

Utilities for analyzing next generation sequencing data
https://github.com/ANGSD-wrapper/angsd-wrapper
MIT License
17 stars 3 forks source link

Fst is not up-to-date with the version of ANGSD we're using #42

Open tvkent opened 8 years ago

tvkent commented 8 years ago

Turns out Fst calculation was completely overhauled and the version in AW does not work with the wrapper in its current form. I'm going to rewrite it to do the 2 population fst estimation I need it to do since I'm already running behind because of this issue, but there's also a 3 population estimation now that we should include.

tvkent commented 7 years ago

To add to this, the new version of angsd also includes more options for input formats, including vcf. Just throwing that out there. I know it would likely be a ton of work to update angsd version

rossibarra commented 7 years ago

Do web have stats on usage/downloads?

arundurvasula commented 7 years ago

Sort of. We have usage stats from the last two weeks, but can't find stuff from before: https://github.com/mojaveazure/angsd-wrapper/graphs/traffic

Maybe a twitter poll to gauge usage?

On Tue, May 2, 2017 at 12:53 PM, Jeffrey Ross-Ibarra < notifications@github.com> wrote:

Do web have stats on usage/downloads?

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-- Arun Durvasula arun.durvasula@gmail.com