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mojaveazure / loomR

An R-based interface for loom files
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var genes from Seurat3 object #44

Closed rmenafra closed 4 years ago

rmenafra commented 5 years ago

Hi everybody, I would like to know where are the var genes from Seurat3 object stored in the loom object and how to access them once I open my loom file in Scanpy. I followed the tutorial https://satijalab.org/seurat/v3.0/conversion_vignette.html after the detection of the top 3000 variable genes using the vst method. I hope this is not an off topic question. Thanks in advance Roberta