Open menage95 opened 1 year ago
Hello,
I have connected to a loom file and would like to extract the matrix counts with gene names for 2 different column attributes. I can do it with one column attribute but ideally need both plus gene names. Below is what I have so far:
lfile <- connect(filename = "file.loom", mode = "r+", skip.validate = TRUE) data<- lfile[["matrix"]][lfile$col.attrs$Tissue[] == "Midbrain", ]
Any help would be much appreciated as all the above returns is a large data frame with no cell numbers or gene names.
Thanks
Hello,
I have connected to a loom file and would like to extract the matrix counts with gene names for 2 different column attributes. I can do it with one column attribute but ideally need both plus gene names. Below is what I have so far:
Any help would be much appreciated as all the above returns is a large data frame with no cell numbers or gene names.
Thanks