This should not be using append mode

moka-guys / automate_demultiplex

Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

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This should not be using append mode #515

Closed RachelDuffin closed 5 months ago

RachelDuffin commented 1 year ago

https://github.com/moka-guys/automate_demultiplex/blob/86c6e99f6fa220fd977e3d933c757417d789c74b/upload_and_setoff_workflows.py#L697

If the script is re-run for a runfolder for whatever reason, this will append another samplesheet to the end of the existing one and cause the TSO app in dnanexus to fail

RachelDuffin commented 9 months ago

This is addressed in v45.0.0