If the amplicon name in lookup table != amplicon name in raw coverage file it's not reported as low coverage.

moka-guys / dnanexus_amplivar_coverage

OBSOLETE: DNAnexus app running a Python script which parses output from amplivar and variant calling steps into one document per sample

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Open aledj2 opened 6 years ago

aledj2 commented 6 years ago

Need to flag this up as coverage for this exon may not be reported

aledj2 commented 6 years ago

removed the need for lookup table in 1cac341fc78292966560e66523f0fce8e488ec01