Spike-in recognition script

moka-guys / helpdesk

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Spike-in recognition script #117

Open adelecorrigan opened 6 years ago

adelecorrigan commented 6 years ago

Please could someone take over the work that Graeme started on writing a script to recognise array spike-ins?

Many thanks, Adele

AmyAmelia commented 6 years ago

@woook to discuss with @Graeme-Smith

AmyAmelia commented 6 years ago

aledj2 commented 6 years ago

see #15

woook commented 6 years ago

Modify Graeme's script to use signal intensity values

woook commented 6 years ago

Architecture review

aledj2 commented 6 years ago

Architecture done.

aledj2 commented 6 years ago

Randomised probe layout. Next help Mike with robot program

aledj2 commented 5 years ago

@andyb3 and @Graeme-Smith to meet and share workload

andyb3 commented 5 years ago

See #236. "We will also require somewhere to record who created and checked a runsheet - maybe this can be set up in a prompt during runsheet creation. We will need to have a chart for runsheet creation and checks as well." - This should be addressed as part of the spike in project (since this will require updating the runsheet creation process anyway).

Graeme-Smith commented 5 years ago

New version of Agilent Software may now detect spike-ins - focus on upstream application, interfacing with MOKA

andyb3 commented 5 years ago

Have had hand over meeting with Graeme.

Audits and projects folder: S:\Genetics_Data2\Array\Audits and Projects\171207 Spike-ins

Notes from architecture meeting with Wook June 2018: https://docs.google.com/document/d/1CB_UdXLkIQgb0be3jc22M0z7Z--7nme8bk_v28Z9cPk/edit?usp=sharing

New table schemas from architecture meeting with Wook June 2018: https://docs.google.com/spreadsheets/d/1LjEAqhuMQj1QhE203xR-jfk3L1NYxaBEIVLMmtYuu3c/edit?usp=sharing

andyb3 commented 5 years ago

New array analysis software supports spike ins. Graeme to test the new software.

andyb3 commented 5 years ago

Graeme going to talk to Mike about liquid handling