How to create control group

molgenis / NIPTeR

R Package for Non Invasive Prenatal Testing (NIPT) analysis

GNU Lesser General Public License v3.0

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How to create control group #21

Open sachuhi opened 4 years ago

sachuhi commented 4 years ago

hello, How to create control group file using 100 NIPT sequences, this is huge data, my system is getting stuck after importing one file, Is it possible for me to analyse the data in ion torrent server ? if yes, how to access server in Rstudio?

ljohansson commented 4 years ago

Dear sachuhi, You can create and save separate NIPTSample objects and later combine them into an NIPTControlGroup. In this way you can process the bam files one by one and perform garbage cleaning after each sample. Unfortunately I don't have any experience with IonTorrent data.

sachuhi commented 4 years ago

Thank you for your valuable info