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molgenis / STEMI-scRNA-seq

single cell experiments in STEMI participants
https://eqtlgen.org/sc/datasets/blokland2024.html
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question about pre-QC data #29

Open wangpenhok opened 4 months ago

wangpenhok commented 4 months ago

hello, thanks for your kind share of the expression data! I really appreciate the work you have done, which deepened our recognition of immune landscape during STEMI. I want to include some data into my own study, but I came across a question about the data in part C, the pre-QC STEMI non-normalized counts: stemi_unfiltered_barcodes.tsv.gz stemi_unfiltered_features_raw.tsv.gz stemi_unfiltered_matrix_raw.mtx.gz

I am wondering if these data are exactly the same with those from raw_feature_matrix directory of cellRanger output. Could you please help me on this question? And if not, I am wondering if it is possible to share the raw_feature_matrix contents with me.

Looking forward to your reply ~

Sincerely

mcamenc commented 3 months ago

Hi!

I would also like to know if it could be possible to share the raw data for each stemi patient, as I guess the pre-QC STEMI non-normalized counts have all samples merged?

Many thanks and regards.