molgenis / VaSeBuilder

Validation Set Builder
GNU Lesser General Public License v3.0
1 stars 3 forks source link

Multi-base, multi-allele variants sometimes have different positions in the filtering list vs. original VCF. #64

Closed TDMedina closed 4 years ago

TDMedina commented 5 years ago

Non-SNP variants sometimes have multiple alleles reported in patient VCF files due to project-based calling. Sometimes, the actual patient-specific allele is recorded in the MVL with the allele-specific position, making it difficult to use the MVL positions for filtering patient VCFs.

TDMedina commented 4 years ago

Made a tool for this.