Samples not included in an MVL filter list are not skipped.

molgenis / VaSeBuilder

Validation Set Builder

GNU Lesser General Public License v3.0

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Samples not included in an MVL filter list are not skipped. #68

Closed TDMedina closed 5 years ago

TDMedina commented 5 years ago

If a sample is included in the input bam and vcf lists, but is NOT present in an MVL filter list, the entire VCF is processed. I think the default behavior should instead be that the entire VCF is skipped.

MatthieuBeukers commented 5 years ago

Should get fixed with pull request #70