Utils: Use variant context file to subset VCF/BCF

molgenis / VaSeBuilder

Validation Set Builder

GNU Lesser General Public License v3.0

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Closed MatthieuBeukers closed 4 years ago

MatthieuBeukers commented 5 years ago

Would be nice to be able to subset one or more VCF/BCF files with a variant context file

TDMedina commented 5 years ago

Let's try to add this to the main VaSeBuilder methods so that these VCF slices get produced along with P-mode.

Maybe let's plan to implement this along with BAM output for the next release.

TDMedina commented 4 years ago

Previous comment has been implemented in P-mode, at least. Need to check D and F modes.