molgenis / capice

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id_source output column actually represents symbol source #169

Open svandenhoek opened 1 year ago

svandenhoek commented 1 year ago

Describe the bug

id_source column in the output actually represents the symbol source: https://www.ensembl.org/info/docs/tools/vep/vep_formats.html#defaultout

SYMBOL_SOURCE - the source of the gene symbol

https://github.com/molgenis/capice/blob/a83dddc98c3156822fb2897c1e66675598b4c86b/src/molgenis/capice/utilities/load_file_postprocessor.py#L37