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molgenis / data-transform-vkgl

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Valid withdrawn genes using alias or previous symbols #60

Closed dennishendriksen closed 2 years ago

dennishendriksen commented 2 years ago

Consider the following two records:

HGNC ID Status  Approved symbol Approved name   Alias symbol    Previous symbol Chromosome  Chromosome location Locus group NCBI gene ID    Ensembl gene ID UCSC gene ID
HGNC:623    Entry Withdrawn APPL    amyloid beta (A4) precursor protein-like        APPL1   9   9q31-qter   other
HGNC:13196  Entry Withdrawn ZWINTAS ZWINT antisense RNA MPP5        10  10q21.1 non-coding RNA

Expected: APPL, APPL1, ZWINTAS, MPP5 are 'invalid' genes Actual: APPL and ZWINTAS are 'invalid' genes. APPL1 and MPP5 are 'valid' genes.