Right now we have hard-coded EXAC_AF, but of course since GnomAD release we want to use that for better results. Or perhaps someone wants to use other allele frequencies for some reason. Therefore we need a cmdline argument that specifies the main AF field to use in the data to be analysed, e.g. --maffield=GNOMAD_AF or --maffield=EXAC_AF (default to keep original behaviour?).
Right now we have hard-coded EXAC_AF, but of course since GnomAD release we want to use that for better results. Or perhaps someone wants to use other allele frequencies for some reason. Therefore we need a cmdline argument that specifies the main AF field to use in the data to be analysed, e.g. --maffield=GNOMAD_AF or --maffield=EXAC_AF (default to keep original behaviour?).