As Tester investigate difference in behaviour in testing 'ds.mice' between Opal and Armadillo

molgenis / molgenis-emx2

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

GNU Lesser General Public License v3.0

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As Tester investigate difference in behaviour in testing 'ds.mice' between Opal and Armadillo #4081

Open StuartWheater opened 1 month ago

StuartWheater commented 1 month ago

The result of running the dsBaseClient test is: devtools::test(filter = "smk-ds.mice", reporter = ProgressReporter$new(max_failures = 999999))

Failure ('test-smk-ds.mice.R:85:3'): mice, second imputation
as.character(newImp$sim1$method) not equal to c("pmm", "norm", "pmm", "pmm", "pmm", "", "", "", "", "", "polyreg").
1/11 mismatches
x[11]: ""
y[11]: "polyreg"

StuartWheater commented 1 month ago

Problem exists with:

PM_BMI_CATEGORICAL with CNSIM1
PM_BMI_CONTINUOUS with CNSIM1
PM_BMI_CONTINUOUS with CNSIM2
PM_BMI_CONTINUOUS with CNSIM3

"polyreg" is method related to factor variable

StuartWheater commented 1 month ago

attributes(study1$PM_BMI_CATEGORICAL) $levels [1] "1" "2" "3"

$class [1] "factor"

$label [1] "Body Mass Index (categorical)"

$labels Less than 25 kg/m2 25 to 30 kg/m2 Over 30 kg/m2 1 2 3

$opal.value_type [1] "integer"

$opal.entity_type [1] "Participant"

$opal.repeatable [1] 0

$opal.index [1] 0

$opal.nature [1] "CATEGORICAL"