malu-rdz
commented
2 years ago When trying it with my files, it appears the following message:
: not foundHarmonizer.sh: 2: : not foundHarmonizer.sh: 4: : not foundHarmonizer.sh: 6: /GenotypeHarmonizer.jar jarfile ..
Hi, I'm just trying to use Genotype Harmonizer and it was not working. So, I tried to just run the examples, exactly as the files were downloaded but, it is not working too. The message below was shown to me. Any ideia what I'm doing wrong? Thank you
: not foundnaryPlinkExample.sh: 2: : not foundnaryPlinkExample.sh: 4: HarmonizeBinaryPlinkExample.sh: 5: cd: can't cd to . : not foundnaryPlinkExample.sh: 6: : not foundmonizer.sh: 2: : not foundmonizer.sh: 4: : not foundmonizer.sh: 6: /GenotypeHarmonizer.jar jarfile . HarmonizeBinaryPlinkExample.sh: 8: --inputType: not found HarmonizeBinaryPlinkExample.sh: 9: --input: not found HarmonizeBinaryPlinkExample.sh: 10: --update-id: not found HarmonizeBinaryPlinkExample.sh: 11: --outputType: not found HarmonizeBinaryPlinkExample.sh: 12: --output: not found HarmonizeBinaryPlinkExample.sh: 13: --refType: not found HarmonizeBinaryPlinkExample.sh: 14: --ref: not found : not foundnaryPlinkExample.sh: 15: : not foundnaryPlinkExample.sh: 16:
/exampleOutput/ed in: .