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molgenis / systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
https://github.com/molgenis/systemsgenetics/wiki
GNU General Public License v3.0
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Not all variants are flipped #666

Open abedkurdi opened 1 year ago

abedkurdi commented 1 year ago

Hello there,

I would like to ask if there is any reason why would Genotype Harmonizer in presence of a reference panel would not flip some variants?

Thank you in advance!