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molgenis / systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
https://github.com/molgenis/systemsgenetics/wiki
GNU General Public License v3.0
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gene_network_decomposition.py #669

Closed biopig closed 7 months ago

biopig commented 7 months ago

I have found some errors in the genenework_decomposition. py script of GeneNetwork Analysis, such as the appearance of the samples parameter and the missing --fastica_stable_safeIntermediate.

In addition, I would like to know what the format of the expression matrix is and if it is possible to list the first few rows and columns.

PatrickDeelen commented 7 months ago

Thank you for your feedback. Please note that the fastica functions are not published and where only used in the past for some internal testing. We are therefore unable to provide support.