molgenis / vibe

Variant Interpretation using Biomedical literature Evidence
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Allow multiple HPO terms to be processed individually. #66

Open svandenhoek opened 3 years ago

svandenhoek commented 3 years ago

Describe the solution you'd like Instead of requiring to run the app multiple when requesting results of multiple HPO-terms individually, allow usage of a command line argument to indicate the phenotypes should be handled individually. Alternativally, if #65 is implemented, indicate separate calls by individual -p arguments while comma-separated HPO-terms within a single -p need to be processed together.

So either: -s (or something alike) -> run each HPO term separately from each other

OR

-p <hpo>,<hpo> -> single call to database with merged results -p <hpo> -p <hpo> -> independent calls to database with individual results

To be determined How output is formatted. Multiple files? Single file ordered per phenotype and then by score?