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molgenis / vip

Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
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`annotate` can fail with 'Failed to instantiate plugin GADO' #432

Closed dennishendriksen closed 1 year ago

dennishendriksen commented 1 year ago 
FAILED cram_multiproject, see /groups/umcg-gcc/tmp01/umcg-dhendriksen/vip/test/output/cram_multiproject/.nxf.log
  MSG: Failed to instantiate plugin GADO: No such file or directory at /groups/umcg-gcc/tmp01/umcg-dhendriksen/vip/resources/vep/plugins/GADO.pm line 60, <FH> line 806288.

caused by GADO not producing all_samples.txt, which appears to be caused due to the usage of HP:0000001 in the cram_multiproject test case.

dennishendriksen commented 1 year ago

see https://github.com/molgenis/systemsgenetics/issues/663