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molgenis / vip

Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
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Succesfull pipeline execution if `individual_id` doesn't exist in vcf #435

Closed dennishendriksen closed 1 year ago

dennishendriksen commented 1 year ago

test_multiproject_classify should fail because the sample sheet contains row

vip2 | fam2 | individual8 | multiproject_classify_fam2_annotations.vcf.gz

but multiproject_classify_fam2_annotations.vcf.gz doesn't contain a sample with name individual8 but contains:

#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  PROBAND0