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molgenis / vip

Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
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validate groupTuple calls #505

Closed dennishendriksen closed 11 months ago

dennishendriksen commented 11 months ago 
$ bash test/test.sh -c
running tests ...
cram/complex                             | PASSED | 157165=completed test/output/cram/complex/.nxf.log
cram/multiproject                        | PASSED | 157166=completed test/output/cram/multiproject/.nxf.log
cram/nanopore_duo                        | PASSED | 157167=completed test/output/cram/nanopore_duo/.nxf.log
cram/nanopore                            | PASSED | 157168=completed test/output/cram/nanopore/.nxf.log
cram/single                              | PASSED | 157169=completed test/output/cram/single/.nxf.log
cram/trio                                | PASSED | 157170=completed test/output/cram/trio/.nxf.log
fastq/nanopore                           | PASSED | 157171=completed test/output/fastq/nanopore/.nxf.log
fastq/pacbio_hifi                        | PASSED | 157172=completed test/output/fastq/pacbio_hifi/.nxf.log
gvcf/multiproject                        | PASSED | 157173=completed test/output/gvcf/multiproject/.nxf.log
gvcf/trio                                | PASSED | 157174=completed test/output/gvcf/trio/.nxf.log
vcf/corner_cases                         | PASSED | 157175=completed test/output/vcf/corner_cases/.nxf.log
vcf/empty_input                          | KAPUTT | 157176=failed    test/output/vcf/empty_input/.nxf.log
vcf/empty_output_filter_samples          | PASSED | 157177=completed test/output/vcf/empty_output_filter_samples/.nxf.log
vcf/empty_output_filter                  | PASSED | 157178=completed test/output/vcf/empty_output_filter/.nxf.log
vcf/lb_b38                               | PASSED | 157179=completed test/output/vcf/lb_b38/.nxf.log
vcf/lb                                   | PASSED | 157180=completed test/output/vcf/lb/.nxf.log
vcf/lp_b38                               | PASSED | 157181=completed test/output/vcf/lp_b38/.nxf.log
vcf/lp                                   | PASSED | 157182=completed test/output/vcf/lp/.nxf.log
vcf/multiproject_classify                | PASSED | 157183=completed test/output/vcf/multiproject_classify/.nxf.log
vcf/snv_proband                          | PASSED | 157184=completed test/output/vcf/snv_proband/.nxf.log
vcf/snv_proband_trio_b38                 | PASSED | 157185=completed test/output/vcf/snv_proband_trio_b38/.nxf.log
vcf/snv_proband_trio_sample_filtering    | PASSED | 157186=completed test/output/vcf/snv_proband_trio_sample_filtering/.nxf.log
vcf/snv_proband_trio                     | PASSED | 157187=completed test/output/vcf/snv_proband_trio/.nxf.log
done

after https://github.com/molgenis/vip/pull/505/commits/68351f75670485e36034da72a9a30e3a92455573:

running tests ...
vcf/empty_input                          | PASSED | 157974=completed test/output/vcf/empty_input/.nxf.log
vcf/snv_proband_trio_b38                 | PASSED | 157975=completed test/output/vcf/snv_proband_trio_b38/.nxf.log
done