Closed bartcharbon closed 10 months ago
End-to-end tests are not executed by Travis CI, please execute manually:
APPTAINER_BIND=$PWD bash test/test.sh
running tests ... vcf/corner_cases | PASSED | 176390=completed output/vcf/corner_cases/.nxf.log vcf/empty_input | PASSED | 176391=completed output/vcf/empty_input/.nxf.log vcf/empty_output_filter_samples | PASSED | 176392=completed output/vcf/empty_output_filter_samples/.nxf.log vcf/empty_output_filter | PASSED | 176393=completed output/vcf/empty_output_filter/.nxf.log vcf/filter_samples | PASSED | 176394=completed output/vcf/filter_samples/.nxf.log vcf/liftover | PASSED | 176395=completed output/vcf/liftover/.nxf.log vcf/multiproject_classify | PASSED | 176396=completed output/vcf/multiproject_classify/.nxf.log vcf/trio | PASSED | 176397=completed output/vcf/trio/.nxf.log vcf/vkgl_lb | PASSED | 176398=completed output/vcf/vkgl_lb/.nxf.log vcf/vkgl_lp | PASSED | 176399=completed output/vcf/vkgl_lp/.nxf.log
End-to-end tests are not executed by Travis CI, please execute manually:
APPTAINER_BIND=$PWD bash test/test.shpassesrunning tests ... vcf/corner_cases | PASSED | 176390=completed output/vcf/corner_cases/.nxf.log vcf/empty_input | PASSED | 176391=completed output/vcf/empty_input/.nxf.log vcf/empty_output_filter_samples | PASSED | 176392=completed output/vcf/empty_output_filter_samples/.nxf.log vcf/empty_output_filter | PASSED | 176393=completed output/vcf/empty_output_filter/.nxf.log vcf/filter_samples | PASSED | 176394=completed output/vcf/filter_samples/.nxf.log vcf/liftover | PASSED | 176395=completed output/vcf/liftover/.nxf.log vcf/multiproject_classify | PASSED | 176396=completed output/vcf/multiproject_classify/.nxf.log vcf/trio | PASSED | 176397=completed output/vcf/trio/.nxf.log vcf/vkgl_lb | PASSED | 176398=completed output/vcf/vkgl_lb/.nxf.log vcf/vkgl_lp | PASSED | 176399=completed output/vcf/vkgl_lp/.nxf.log