Check "homozygous", and "heterozygous" options for HiFiASM, possibly not reading the HiFi reads? - Githubissues

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Check "homozygous", and "heterozygous" options for HiFiASM, possibly not reading the HiFi reads? #24

Closed molikd closed 2 years ago

molikd commented 2 years ago

Check "homozygous", and "heterozygous" options for HiFiASM, possibly not reading the HiFi reads?

see the run.nf.

molikd commented 2 years ago

https://hifiasm.readthedocs.io/en/latest/parameter-reference.html

--primary Output a primary assembly and an alternate assembly. Enable this option or -l0 outputs a primary assembly and an alternate assembly.

molikd commented 2 years ago

watch out for changes in hap/primary alternate when checking this.

molikd commented 2 years ago

additional output channel

molikd commented 2 years ago

Thinking back about this, I don't really know how I feel. I added a "primary" mode to HiFiASM in 8056cb3 it doesn't do anything with the alternate, but I dunno. We'll see how users feel.