otb.sh needs to be updated for hic/mat/pat reads

molikd / otb

Only The Best (Genome Assembly Tools)

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otb.sh needs to be updated for hic/mat/pat reads #44

Closed molikd closed 2 years ago

molikd commented 2 years ago

params.hicreadf = "$baseDir/data/.R1.fastq.gz"
params.hicreadr = "$baseDir/data/.R2.fastq.gz"
params.matreadf = "$baseDir/data/.R1.fastq.gz"
params.matreadr = "$baseDir/data/.R2.fastq.gz"
params.patreadf = "$baseDir/data/.R1.fastq.gz"
params.patreadr = "$baseDir/data/.R2.fastq.gz"

otb needs correct arguments

molikd commented 2 years ago

fixed in merge #45