Update to fcs-adaptor no longer writes fa.gz file in cleaned_sequences/ output directory or outputs files with .fa extension. Need to remove gzip -d line since zipped file isn't present and change the glob terms for output channels to keep pipeline from crashing at this step.
Update to
fcs-adaptorno longer writesfa.gzfile incleaned_sequences/output directory or outputs files with.faextension. Need to removegzip -dline since zipped file isn't present and change the glob terms for output channels to keep pipeline from crashing at this step.