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molinerisLab / 3plex

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suggestion: swap Triplexator for PATO #1

Open amatria opened 1 year ago

amatria commented 1 year ago

Hi!

We recently published a new tool, PATO, that is a modern and much faster version of Triplexator: https://doi.org/10.1093/bioinformatics/btad134. I see that your pipeline calls Triplexator under the hood, therefore I believe that you may be interested in swapping Triplexator for PATO, as it will provide faster analyses for 3plex. PATO exports the same command line interface as Triplexator, and it even allows finding triplex features as small as 5 nt in length, so it perfectly suits 3plex.

Let me know what you think :)

moxgreen commented 1 year ago

Dear Amatria, we already swapped tripelxator for PATO in our internal development version. Great work!