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molinfo-vienna / CDPKit

The Chemical Data Processing Toolkit
https://cdpkit.org
GNU Lesser General Public License v2.1
75 stars 10 forks source link

How to install on M1 mac #3

Closed thegodone closed 1 year ago

thegodone commented 1 year ago

Can you provide instructions to install on M1 mac please ?

following the guide

make gives me this error

CDPKit/Libs/C++/Source/CDPL/Internal/StringDataIOUtilities.hpp:88:27: error: no member named 'setlocale' in namespace 'std'; did you mean simply 'setlocale'?

seidelt commented 1 year ago

A header include was missing that makes 'setlocale' available in namespace 'std'. This has been fixed now and very likely the compilation error will be gone. Unfortunately, I didn't try to compile CDPKit on MacOSX for years now (I am not a Mac user and also do not have access to a machine for build test), thus many more errors might occur!

thegodone commented 1 year ago

I still have the same error: are you sure you include the header ?

seidelt commented 1 year ago

You are right, sorry, I committed but didn't push the changes (was in a hurry yesterday and forgot). Please do a pull of the changes and try again.

thegodone commented 1 year ago

thanks, I have a new error now : /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/Chem/Atom2DCoordinatesCalculator.hpp:367:10: note: previous declaration is here class AtomNode : public LGNode ^ /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Chem/Atom2DCoordinatesCalculator.cpp:135:52: error: no class named 'EdgePriorityGreaterCmpFunc' in 'CDPL::Chem::Atom2DCoordinatesCalculator::AtomNode' class Chem::Atom2DCoordinatesCalculator::AtomNode::EdgePriorityGreaterCmpFunc : 


/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Chem/Atom2DCoordinatesCalculator.cpp:136:36: error: unknown type name 'LGEdge'
        public std::binary_function<const LGEdge*, const LGEdge*, bool>
                                          ^
at 16% compilation.
seidelt commented 1 year ago

Thank you for reporting the compilation errors, but be prepared for many more of them! I have fixed the above issue (my gcc on CentOS Stream 8 seems to be much more tolerant), please update your sources and try again....

thegodone commented 1 year ago

yes I know thanks for help by the way. next bug ;-) /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94EnergyFunctions.hpp:703:9: error: no matching function for call to 'accumMMFF94InteractionEnergies' return Detail::accumMMFF94InteractionEnergies(beg, end, coords, &calcMMFF94TorsionEnergy<ValueType, CoordsArray>); ^~~~~~~~~~~~~ /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94EnergyCalculator.hpp:188:19: note: in instantiation of function template specialization 'CDPL::ForceField::calcMMFF94TorsionEnergy<double, std::__wrap_iter<const CDPL::ForceField::MMFF94TorsionInteraction *>, std::vector<CDPL::Math::CVector<double, 3>>>' requested here torsionEnergy = calcMMFF94TorsionEnergy(interactionData->getTorsionInteractions().getElementsBegin(), ^ /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/ConfGen/FragmentTreeNode.cpp:896:25: note: in instantiation of function template specialization 'CDPL::ForceField::MMFF94EnergyCalculator::operator()<std::vector<CDPL::Math::CVector<double, 3>>>' requested here return mmff94EnergyCalc(coords.getData()); ^ /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94EnergyFunctions.hpp:513:14: note: candidate template ignored: couldn't infer template argument 'FuncType' ValueType accumMMFF94InteractionEnergies(Iter& beg, const Iter& end, const CoordsArray& coords, const FuncType& func) ^

at 57% compulation so we progress.

seidelt commented 1 year ago

57% is actually not that bad ;-) The above problem should be fixed now, please try again...

thegodone commented 1 year ago

little progress so still in the 3D NRJ computations: /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94GradientFunctions.hpp:461:14: note: candidate template ignored: couldn't infer template argument 'FuncType' ValueType calcMMFF94InteractionGradient(Iter& beg, const Iter& end, const CoordsArray& coords, GradVector& grad, ^ /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94GradientFunctions.hpp:746:9: error: no matching function for call to 'calcMMFF94InteractionGradient' return Detail::calcMMFF94InteractionGradient(beg, end, coords, grad, ^~~~~~~~~~~~ /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/ForceField/MMFF94GradientCalculator.hpp:300:25: note: in instantiation of function template specialization 'CDPL::ForceField::calcMMFF94ElectrostaticGradient<double, std::__wrap_iter<const CDPL::ForceField::MMFF94ElectrostaticInteraction *>, std::vector<CDPL::Math::CVector<double, 3>>, std::vector<CDPL::Math::CVector<double, 3>>>' requested here electrostaticEnergy = calcMMFF94ElectrostaticGradient(interactionData->getElectrostaticInteractions().getElementsBegin(), ^

seidelt commented 1 year ago

Has been fixed, next round please!

thegodone commented 1 year ago

yes next round: /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Shape/FastGaussianShapeAlignment.cpp:521:9: error: no member named 'math' in namespace 'boost'; did you mean 'Math'? if (!boost::math::isfinite(minimizer.getFunctionValue())) // sanity check ^~~ Math /Users/tgg/Downloads/CDPKit/Libs/C++/Include/CDPL/Math/Quaternion.hpp:48:12: note: 'Math' declared here namespace Math ^ /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Shape/FastGaussianShapeAlignment.cpp:521:9: error: no member named 'isfinite' in namespace 'CDPL::Math'; did you mean 'isdigit'? if (!boost::math::isfinite(minimizer.getFunctionValue())) // sanity check

62%

seidelt commented 1 year ago

Has been fixed, next please!

thegodone commented 1 year ago

hum this one is on precision, I have already this error in another code but don't remember how I fixded it ;-): In file included from /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/VectorExpressionExport.cpp:35: In file included from /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/VectorVisitor.hpp:45: /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/NumPy.hpp:69:29: error: use of undeclared identifier 'NPY_FLOAT128' static const int Value = NPY_FLOAT128; ^

seidelt commented 1 year ago

Should also be fixed, the python wrapper code will lead to many more errors I fear...

thegodone commented 1 year ago

Yes thanks a lot it works now

image
thegodone commented 1 year ago

Do you have a simple test to check if python is working on a dummy molecule like CCCO or whatever ? thanks Guillaume

seidelt commented 1 year ago

Wow, didn't expect that we are already done, really great! In order to use the python wrapper you have to add '/Python' to the PYTHONPATH env. variable. In 'Examples/Python' you can find several python scripts for testing....

seidelt commented 1 year ago

For a quick test try:

import CDPL.Chem as Chem

Chem.parseSMILES('CCCCO')

thegodone commented 1 year ago

ok it is not finished

image
seidelt commented 1 year ago

Well, this is really bad now because I would need a Mac to nail down the problem :-/ Could you please try to execute one of the command line tools in the /Bin subdirectory and tell whether also a segmentation fault occurs ? - this is to find out whether it is only a problem in the python wrapper...

thegodone commented 1 year ago

(base) tgg@gvalwu01993 Shell % cd /Users/Shared/CDPKit/ (base) tgg@gvalwu01993 CDPKit % ls Bin Frameworks Include Libs Python (base) tgg@gvalwu01993 CDPKit % cd Bin (base) tgg@gvalwu01993 Bin % ls confgen genfraglib psdcreate psdinfo psdmerge psdscreen shapescreen structgen tautgen (base) tgg@gvalwu01993 Bin % confgen zsh: command not found: confgen (base) tgg@gvalwu01993 Bin % ./confgen dyld[62492]: Library not loaded: @rpath/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen Referenced from: <82E5E4C5-F61E-3D7B-A50F-118EDA22F8F8> /Users/Shared/CDPKit/Bin/confgen Reason: tried: '/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/../Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/../Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Volumes/Preboot/Cryptexes/OS@rpath/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/../Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Users/../Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/Library/Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file), '/System/Library/Frameworks/CDPL-ConfGen.framework/Versions/1.0/CDPL-ConfGen' (no such file, not in dyld cache) zsh: abort ./confgen (base) tgg@gvalwu01993 Bin % ./psdinfo dyld[62546]: Library not loaded: @rpath/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol Referenced from: <54BBB2B4-72AA-318D-9761-2D266424B664> /Users/Shared/CDPKit/Bin/psdinfo Reason: tried: '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/../Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/../Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Volumes/Preboot/Cryptexes/OS@rpath/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/../Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Users/../Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/Library/Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file), '/System/Library/Frameworks/CDPL-Biomol.framework/Versions/1.0/CDPL-Biomol' (no such file, not in dyld cache) zsh: abort ./psdinfo (base) tgg@gvalwu01993 Bin % ./tautgen dyld[62561]: Library not loaded: @rpath/CDPL-Chem.framework/Versions/1.0/CDPL-Chem Referenced from: <7CAA1B75-43AE-36BB-91BC-982E5942D41D> /Users/Shared/CDPKit/Bin/tautgen Reason: tried: '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/../Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/../Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Volumes/Preboot/Cryptexes/OS@rpath/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/../Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/tgg/miniforge3/envs/tf/lib/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Users/../Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/Library/Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file), '/System/Library/Frameworks/CDPL-Chem.framework/Versions/1.0/CDPL-Chem' (no such file, not in dyld cache) zsh: abort ./tautgen

seidelt commented 1 year ago

Sad but I guess the journey ends here, sorry for that! This looks like the build systems needs a significant update/rewrite to make CDPKit installations work on current Macs. However, CDPKit does not need to be installed to be used, you can also directly use the binaries generated in the build directory (at least on Linux). This is one last option we could try. PYTHONPATH then needs to point to /Libs/Python and executables can be found in separate subdirectories of /Apps. Maybe a new make run is needed to clean things up from the previous 'make install'

thegodone commented 1 year ago

Can you explain the wait I should do properly or better the build, you mean no need to make install only make a map the build dir correct ? I see that I need to define the build dir instead of the install dir, I will try this.

thegodone commented 1 year ago

I will send you the logs of the install maybe it is related to one warning part that occurs almost everywhere ? I just rerun the make after a make clean

seidelt commented 1 year ago

'make clean' is not necessary, just a simple 'make'. The problem is that the installed executable binaries cannot find the CDPL frameworks they are linked against. 10 years ago everything worked fine, but, as expected, MacOS X has changed since then which now causes the observed problems. If you use the binaries in the build directory the path to the linked against frameworks is hardcoded and thus they will be found. However, you cannot move the build directory to a different location because then the hardcoded paths become invalid, this is the downside here...

thegodone commented 1 year ago

My logs

Le 15 mars 2023 à 14:21, Thomas Seidel @.***> a écrit :



'make clean' is not necessary, just a simple 'make'. The problem is that the installed executable binaries cannot find the CDPL frameworks they are linked against. 10 years ago everything worked fine, but, as expected, MacOS X has changed since then which now causes the observed problems. If you use the binaries in the build directory the path to the linked against frameworks is hardcoded and thus they will be found. However, you cannot move the build directory to a different location because then the hardcoded paths become invalid, this is the downside here...

— Reply to this email directly, view it on GitHub https://github.com/molinfo-vienna/CDPKit/issues/3#issuecomment-1470002576, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJBWYRRRXCAB5PVSVFF3ADW4G65PANCNFSM6AAAAAAVYHP744. You are receiving this because you authored the thread.

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-I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include -I/Users/tgg/Downloads/CDPKit/External/LibInChI -O3 -DNDEBUG -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -MD -MT External/LibInChI/CMakeFiles/inchi-static.dir/strutil.c.o -MF CMakeFiles/inchi-static.dir/strutil.c.o.d -o CMakeFiles/inchi-static.dir/strutil.c.o -c /Users/tgg/Downloads/CDPKit/External/LibInChI/strutil.c [ 1%] Building C object External/LibInChI/CMakeFiles/inchi-static.dir/sha2.c.o cd /Users/tgg/Downloads/CDPKit/build/External/LibInChI && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DTARGET_API_LIB -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include -I/Users/tgg/Downloads/CDPKit/External/LibInChI -O3 -DNDEBUG -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -MD 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Apps/CmdLine/Lib/CMakeFiles/cmdline-lib-static.dir/CmdLineBase.cpp.o -MF CMakeFiles/cmdline-lib-static.dir/CmdLineBase.cpp.o.d -o CMakeFiles/cmdline-lib-static.dir/CmdLineBase.cpp.o -c /Users/tgg/Downloads/CDPKit/Apps/CmdLine/Lib/CmdLineBase.cpp Consolidate compiler generated dependencies of target cdpl-internal-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Internal/CMakeFiles/cdpl-internal-static.dir/build.make Libs/C++/Source/CDPL/Internal/CMakeFiles/cdpl-internal-static.dir/build [ 1%] Building CXX object Libs/Python/CDPL/CMakeFiles/_cdpl.dir/VersionInfoExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_PYTHON_USE_GCC_SYMBOL_VISIBILITY -D_cdpl_EXPORTS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/Python/CDPL/CMakeFiles/_cdpl.dir/VersionInfoExport.cpp.o -MF CMakeFiles/_cdpl.dir/VersionInfoExport.cpp.o.d -o CMakeFiles/_cdpl.dir/VersionInfoExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/VersionInfoExport.cpp Consolidate compiler generated dependencies of target cdpl-base-shared Consolidate compiler generated dependencies of target cdpl-base-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Base/CMakeFiles/cdpl-base-shared.dir/build.make Libs/C++/Source/CDPL/Base/CMakeFiles/cdpl-base-shared.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Base/CMakeFiles/cdpl-base-static.dir/build.make 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Consolidate compiler generated dependencies of target _math-impl make[2]: Nothing to be done for Libs/C++/Source/CDPL/Base/CMakeFiles/cdpl-base-static.dir/build'. /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/build.make Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/build [ 1%] Built target cdpl-internal-static [ 2%] Built target cdpl-base-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/build.make Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/build.make Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/depend [ 2%] Built target cdpl-base-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/Python/CDPL/Base/CMakeFiles/_base.dir/build.make Libs/Python/CDPL/Base/CMakeFiles/_base.dir/depend cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Util /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Util /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/DependInfo.cmake --color= cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Math /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Math /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/DependInfo.cmake --color= cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Base /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Base/CMakeFiles/_base.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target cdpl-math-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/build.make Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/build make[2]: Nothing to be done forLibs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-shared.dir/build'. Consolidate compiler generated dependencies of target cdpl-util-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/build.make Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/build [ 2%] Built target cdpl-math-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/build.make Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/depend [ 2%] Building CXX object Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/SparseMatrixExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Math && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_BIND_GLOBAL_PLACEHOLDERS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include -I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math -I/Users/tgg/miniforge3/envs/tf/lib/python3.9/site-packages/numpy/core/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -std=gnu++11 -MD -MT Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/SparseMatrixExport.cpp.o -MF CMakeFiles/_math-impl.dir/SparseMatrixExport.cpp.o.d -o CMakeFiles/_math-impl.dir/SparseMatrixExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/SparseMatrixExport.cpp cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Util /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Util /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/DependInfo.cmake --color= [ 2%] Building CXX object Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/MatrixExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Math && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_BIND_GLOBAL_PLACEHOLDERS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include -I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math -I/Users/tgg/miniforge3/envs/tf/lib/python3.9/site-packages/numpy/core/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -std=gnu++11 -MD -MT Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/MatrixExport.cpp.o -MF CMakeFiles/_math-impl.dir/MatrixExport.cpp.o.d -o CMakeFiles/_math-impl.dir/MatrixExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/MatrixExport.cpp make[2]: Nothing to be done for Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-shared.dir/build'. Consolidate compiler generated dependencies of target _base /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/Python/CDPL/Base/CMakeFiles/_base.dir/build.make Libs/Python/CDPL/Base/CMakeFiles/_base.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/build.make Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/depend [ 2%] Built target cdpl-util-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/build.make Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/depend cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Math /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Math /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/DependInfo.cmake --color= cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target cdpl-util-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/build.make Libs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/build [ 2%] Building CXX object Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/CMatrixExport1.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Math && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_BIND_GLOBAL_PLACEHOLDERS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include -I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math -I/Users/tgg/miniforge3/envs/tf/lib/python3.9/site-packages/numpy/core/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -std=gnu++11 -MD -MT Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/CMatrixExport1.cpp.o -MF CMakeFiles/_math-impl.dir/CMatrixExport1.cpp.o.d -o CMakeFiles/_math-impl.dir/CMatrixExport1.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/CMatrixExport1.cpp Consolidate compiler generated dependencies of target cdpl-math-static make[2]: Nothing to be done forLibs/C++/Source/CDPL/Util/CMakeFiles/cdpl-util-static.dir/build'. /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/build.make Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/build make[2]: Nothing to be done for `Libs/C++/Source/CDPL/Math/CMakeFiles/cdpl-math-static.dir/build'. [ 2%] Built target cdpl-util-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/Python/CDPL/Util/CMakeFiles/_util.dir/build.make Libs/Python/CDPL/Util/CMakeFiles/_util.dir/depend cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Util /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Util /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Util/CMakeFiles/_util.dir/DependInfo.cmake --color= [ 2%] Built target cdpl-math-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/build.make Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/depend [ 2%] Building CXX object Libs/Python/CDPL/Base/CMakeFiles/_base.dir/DataIOBaseExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Base && 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/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base/DataIOBaseExport.cpp cd /Users/tgg/Downloads/CDPKit/build && /Users/tgg/miniforge3/envs/tf/bin/cmake -E cmake_depends "Unix Makefiles" /Users/tgg/Downloads/CDPKit /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid /Users/tgg/Downloads/CDPKit/build /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target cdpl-grid-shared /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/build.make Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/build Consolidate compiler generated dependencies of target _util /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/Python/CDPL/Util/CMakeFiles/_util.dir/build.make Libs/Python/CDPL/Util/CMakeFiles/_util.dir/build [ 2%] Building CXX object Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/CDFDataWriter.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -Dcdpl_grid_shared_EXPORTS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/CDFDataWriter.cpp.o 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-I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Util -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/Python/CDPL/Util/CMakeFiles/_util.dir/BitSetExport.cpp.o -MF CMakeFiles/_util.dir/BitSetExport.cpp.o.d -o CMakeFiles/_util.dir/BitSetExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Util/BitSetExport.cpp Consolidate compiler generated dependencies of target cdpl-grid-static /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/build.make Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/build [ 2%] Building CXX object Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/CDFRegularGridSetDataReader.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DCDPL_BASE_STATIC_LINK -DCDPL_GRID_STATIC_LINK -DCDPL_MATH_STATIC_LINK -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -std=gnu++11 -MD -MT Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/CDFRegularGridSetDataReader.cpp.o -MF CMakeFiles/cdpl-grid-static.dir/CDFRegularGridSetDataReader.cpp.o.d -o 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CMakeFiles/_math-impl.dir/CMatrixExport2.cpp.o.d -o CMakeFiles/_math-impl.dir/CMatrixExport2.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Math/CMatrixExport2.cpp [ 5%] Building CXX object Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/CDFDRegularGridReader.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -Dcdpl_grid_shared_EXPORTS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 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-I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/Python/CDPL/Base/CMakeFiles/_base.dir/IOStreamExport.cpp.o -MF CMakeFiles/_base.dir/IOStreamExport.cpp.o.d -o CMakeFiles/_base.dir/IOStreamExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base/IOStreamExport.cpp [ 5%] Building CXX object Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/CDFRegularGridSetDataWriter.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib libcmdline-lib.a [ 5%] Built target cmdline-lib-static [ 5%] Building CXX object Libs/Python/CDPL/Util/CMakeFiles/_util.dir/ArrayExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Util && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_PYTHON_USE_GCC_SYMBOL_VISIBILITY -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -D_util_EXPORTS -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Util -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/Python/CDPL/Util/CMakeFiles/_util.dir/ArrayExport.cpp.o -MF CMakeFiles/_util.dir/ArrayExport.cpp.o.d -o CMakeFiles/_util.dir/ArrayExport.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Util/ArrayExport.cpp [ 5%] Building CXX object Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/AttributedGridPropertyFunctions.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DCDPL_BASE_STATIC_LINK -DCDPL_GRID_STATIC_LINK -DCDPL_MATH_STATIC_LINK -I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -std=gnu++11 -MD -MT Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-static.dir/AttributedGridPropertyFunctions.cpp.o -MF CMakeFiles/cdpl-grid-static.dir/AttributedGridPropertyFunctions.cpp.o.d -o CMakeFiles/cdpl-grid-static.dir/AttributedGridPropertyFunctions.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid/AttributedGridPropertyFunctions.cpp [ 5%] Building CXX object Libs/Python/CDPL/Util/CMakeFiles/_util.dir/BronKerboschAlgorithmExport.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/Python/CDPL/Util && 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-I/Users/tgg/miniforge3/envs/tf/include/python3.9 -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL -I/Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/Python/CDPL/Base/CMakeFiles/_base.dir/FromPythonConverterRegistration.cpp.o -MF CMakeFiles/_base.dir/FromPythonConverterRegistration.cpp.o.d -o CMakeFiles/_base.dir/FromPythonConverterRegistration.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/Python/CDPL/Base/FromPythonConverterRegistration.cpp [ 5%] Linking CXX static library libcdpl-grid.a [ 5%] Building CXX object Libs/Python/CDPL/Math/CMakeFiles/_math-impl.dir/CMatrixExport3.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Grid && /Users/tgg/miniforge3/envs/tf/bin/cmake -P CMakeFiles/cdpl-grid-static.dir/cmake_clean_target.cmake cd 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-I/Users/tgg/Downloads/CDPKit/Libs/C++/Include -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid -I/Users/tgg/Downloads/CDPKit/Libs/C++/Source -isystem /Users/tgg/miniforge3/envs/tf/include -O3 -DNDEBUG -DCDPL_MATH_CHECKS_DISABLE -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.1.sdk -fPIC -std=gnu++11 -MD -MT Libs/C++/Source/CDPL/Grid/CMakeFiles/cdpl-grid-shared.dir/CDFRegularGridDataReader.cpp.o -MF CMakeFiles/cdpl-grid-shared.dir/CDFRegularGridDataReader.cpp.o.d -o CMakeFiles/cdpl-grid-shared.dir/CDFRegularGridDataReader.cpp.o -c /Users/tgg/Downloads/CDPKit/Libs/C++/Source/CDPL/Grid/CDFRegularGridDataReader.cpp [ 7%] Building CXX object Libs/C++/Source/CDPL/Chem/CMakeFiles/cdpl-chem-static.dir/Entity3DContainer.cpp.o cd /Users/tgg/Downloads/CDPKit/build/Libs/C++/Source/CDPL/Chem && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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seidelt commented 1 year ago

The output looks good! I am sure the problems arise from the RPATH settings in the built binaries. To be able to fix such issues in an efficient manner, I need a Mac at hand. I will see if I can get a Mac mini for testing purposes from the university. Until then the CDPKit build on Macs remains broken.... sorry!

thegodone commented 1 year ago

Thanks Thomas, I understand hope you can have access soon to a Mac min.

BR

Guillaume Godin

Le 16 mars 2023 à 09:52, Thomas Seidel @.***> a écrit :

The output looks good! I am sure the problems arise from the RPATH settings in the built binaries. To be able to fix such issues in an efficient manner, I need a Mac at hand. I will see if I can get a Mac mini for testing purposes from the university. Until then the CDPKit build on Macs remains broken.... sorry!

— Reply to this email directly, view it on GitHub https://github.com/molinfo-vienna/CDPKit/issues/3#issuecomment-1471543222, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJBWYSGWDDCZL73RAF7HATW4LIFXANCNFSM6AAAAAAVYHP744. You are receiving this because you authored the thread.

seidelt commented 1 year ago

Good news: CDPKit now runs flawlessly on Macs (I tested on a M2 MacBook Air running Ventura, dependencies were installed via homebrew)!! Please check whether CDPKit also works on your Mac. To avoid any interference from a previous build make a fresh start with an empty build folder!